Is there a post on this? I have seen one other member discussing that the "flap insert" fit did not properly and kept falling out, so he secured properly. However, I have not seen anything along the lines of adding a foam filler to the insert - and I am interested.
As far as the Op's question, I had the same distortion. The cutting the green wire helped a bit, adjusting the main volume and bass levels helped more, but still had that blown speaker slapping sound at a robust volume. So, I went with the Pioneer WX010A sub. With the Emira's small cabin, the WX's low power draw, tiny size and output level it is perfect. I took the time to wrap it in Alcantara and it sits on the rear shelf between the seats. It is barely noticeable, looks like its supposed to be there, takes up very little space at all and sounds great.
Now, if I can just find the time to install those darn tweeters in the A pillars..